Science

AI for biology, chemistry, materials, physics, maths and climate.

alphafold3 leads with 58, ahead of deeplabcut (53) and nnunet (52). 8 projects ranked by score. Updated from public GitHub data.

Best of each kind

  1. Ready to usepaper-qa

    Python RAG library and CLI for answering questions over scientific PDFs with citations

    50 score9.5k stars
    4 Apr 2026: 8,273 stars11 Apr 2026: 8,302 stars18 Apr 2026: 8,325 stars25 Apr 2026: 8,352 stars2 May 2026: 8,373 stars9 May 2026: 8,400 stars16 May 2026: 8,434 stars23 May 2026: 8,478 stars30 May 2026: 8,526 stars6 Jun 2026: 8,591 stars13 Jun 2026: 8,645 stars20 Jun 2026: 8,692 stars27 Jun 2026: 8,732 stars4 Jul 2026: 8,779 stars11 Jul 2026: 8,821 stars18 Jul 2026: 8,864 stars25 Jul 2026: 8,908 stars1 Aug 2026: 8,944 stars8 Aug 2026: 8,975 stars15 Aug 2026: 9,012 stars22 Aug 2026: 9,054 stars29 Aug 2026: 9,098 stars5 Sept 2026: 9,138 stars12 Sept 2026: 9,176 stars19 Sept 2026: 9,207 stars26 Sept 2026: 9,234 stars3 Oct 2026: 9,281 stars10 Oct 2026: 9,335 stars17 Oct 2026: 9,398 stars24 Oct 2026: 9,460 stars31 Oct 2026: 9,525 stars#1 of 1 · RAG and search
  2. Parts to build withalphafold3

    Inference pipeline for AlphaFold 3 biomolecular structure prediction

    58 score8.7k stars
    4 Apr 2026: 7,727 stars11 Apr 2026: 7,764 stars18 Apr 2026: 7,786 stars25 Apr 2026: 7,834 stars2 May 2026: 7,865 stars9 May 2026: 7,897 stars16 May 2026: 7,967 stars23 May 2026: 8,007 stars30 May 2026: 8,055 stars6 Jun 2026: 8,087 stars13 Jun 2026: 8,165 stars20 Jun 2026: 8,195 stars27 Jun 2026: 8,227 stars4 Jul 2026: 8,254 stars11 Jul 2026: 8,276 stars18 Jul 2026: 8,295 stars25 Jul 2026: 8,315 stars1 Aug 2026: 8,371 stars8 Aug 2026: 8,407 stars15 Aug 2026: 8,438 stars22 Aug 2026: 8,462 stars29 Aug 2026: 8,480 stars5 Sept 2026: 8,505 stars12 Sept 2026: 8,531 stars19 Sept 2026: 8,556 stars26 Sept 2026: 8,578 stars3 Oct 2026: 8,595 stars10 Oct 2026: 8,618 stars17 Oct 2026: 8,646 stars24 Oct 2026: 8,676 stars31 Oct 2026: 8,707 stars#1 of 7 · Open models

Ready to use

apps, CLIs and tools you install and run. One project.

All fields
  1. 1
    paper-qaPython RAG library and CLI for answering questions over scientific PDFs with citations30th in RAG and search · Apache-2.0
    4 Apr 2026: 8,273 stars11 Apr 2026: 8,302 stars18 Apr 2026: 8,325 stars25 Apr 2026: 8,352 stars2 May 2026: 8,373 stars9 May 2026: 8,400 stars16 May 2026: 8,434 stars23 May 2026: 8,478 stars30 May 2026: 8,526 stars6 Jun 2026: 8,591 stars13 Jun 2026: 8,645 stars20 Jun 2026: 8,692 stars27 Jun 2026: 8,732 stars4 Jul 2026: 8,779 stars11 Jul 2026: 8,821 stars18 Jul 2026: 8,864 stars25 Jul 2026: 8,908 stars1 Aug 2026: 8,944 stars8 Aug 2026: 8,975 stars15 Aug 2026: 9,012 stars22 Aug 2026: 9,054 stars29 Aug 2026: 9,098 stars5 Sept 2026: 9,138 stars12 Sept 2026: 9,176 stars19 Sept 2026: 9,207 stars26 Sept 2026: 9,234 stars3 Oct 2026: 9,281 stars10 Oct 2026: 9,335 stars17 Oct 2026: 9,398 stars24 Oct 2026: 9,460 stars31 Oct 2026: 9,525 stars
    9.5k ★
    50

Parts to build with

libraries, models, servers and add-ons. 7 projects, ranked by score.

  1. 1
    alphafold3Inference pipeline for AlphaFold 3 biomolecular structure prediction19th in Open models · Apache-2.0
    4 Apr 2026: 7,727 stars11 Apr 2026: 7,764 stars18 Apr 2026: 7,786 stars25 Apr 2026: 7,834 stars2 May 2026: 7,865 stars9 May 2026: 7,897 stars16 May 2026: 7,967 stars23 May 2026: 8,007 stars30 May 2026: 8,055 stars6 Jun 2026: 8,087 stars13 Jun 2026: 8,165 stars20 Jun 2026: 8,195 stars27 Jun 2026: 8,227 stars4 Jul 2026: 8,254 stars11 Jul 2026: 8,276 stars18 Jul 2026: 8,295 stars25 Jul 2026: 8,315 stars1 Aug 2026: 8,371 stars8 Aug 2026: 8,407 stars15 Aug 2026: 8,438 stars22 Aug 2026: 8,462 stars29 Aug 2026: 8,480 stars5 Sept 2026: 8,505 stars12 Sept 2026: 8,531 stars19 Sept 2026: 8,556 stars26 Sept 2026: 8,578 stars3 Oct 2026: 8,595 stars10 Oct 2026: 8,618 stars17 Oct 2026: 8,646 stars24 Oct 2026: 8,676 stars31 Oct 2026: 8,707 stars
    8.7k ★
    58
  2. 2
    deeplabcutMarkerless animal pose estimation toolbox with GUI and Python API90th in ML libraries · LGPL-3.0
    3 Apr 2026: 5,536 stars10 Apr 2026: 5,544 stars17 Apr 2026: 5,559 stars24 Apr 2026: 5,566 stars1 May 2026: 5,582 stars8 May 2026: 5,595 stars15 May 2026: 5,606 stars22 May 2026: 5,616 stars29 May 2026: 5,628 stars5 Jun 2026: 5,643 stars12 Jun 2026: 5,658 stars19 Jun 2026: 5,669 stars26 Jun 2026: 5,676 stars3 Jul 2026: 5,682 stars10 Jul 2026: 5,687 stars17 Jul 2026: 5,690 stars24 Jul 2026: 5,700 stars31 Jul 2026: 5,707 stars7 Aug 2026: 5,713 stars14 Aug 2026: 5,718 stars21 Aug 2026: 5,728 stars28 Aug 2026: 5,733 stars4 Sept 2026: 5,746 stars11 Sept 2026: 5,755 stars18 Sept 2026: 5,762 stars25 Sept 2026: 5,769 stars2 Oct 2026: 5,772 stars9 Oct 2026: 5,776 stars16 Oct 2026: 5,785 stars23 Oct 2026: 5,798 stars30 Oct 2026: 5,810 stars
    5.8k ★
    53
  3. 3
    nnunetSelf-configuring U-Net framework for biomedical image segmentation29th in Fine-tuning · Apache-2.0
    4 Apr 2026: 8,147 stars11 Apr 2026: 8,179 stars18 Apr 2026: 8,231 stars25 Apr 2026: 8,270 stars2 May 2026: 8,298 stars9 May 2026: 8,327 stars16 May 2026: 8,355 stars23 May 2026: 8,391 stars30 May 2026: 8,419 stars6 Jun 2026: 8,451 stars13 Jun 2026: 8,476 stars20 Jun 2026: 8,493 stars27 Jun 2026: 8,532 stars4 Jul 2026: 8,560 stars11 Jul 2026: 8,597 stars18 Jul 2026: 8,617 stars25 Jul 2026: 8,643 stars1 Aug 2026: 8,659 stars8 Aug 2026: 8,729 stars15 Aug 2026: 8,753 stars22 Aug 2026: 8,781 stars29 Aug 2026: 8,805 stars5 Sept 2026: 8,825 stars12 Sept 2026: 8,855 stars19 Sept 2026: 8,878 stars26 Sept 2026: 8,895 stars3 Oct 2026: 8,918 stars10 Oct 2026: 8,932 stars17 Oct 2026: 8,958 stars24 Oct 2026: 8,977 stars31 Oct 2026: 9,000 stars
    9k ★
    52
  4. 4
    weathernextJAX code and weights for DeepMind's WeatherNext 2 and cyclone forecast models28th in Open models · Apache-2.0
    4 Apr 2026: 6,505 stars11 Apr 2026: 6,521 stars18 Apr 2026: 6,536 stars25 Apr 2026: 6,556 stars2 May 2026: 6,574 stars9 May 2026: 6,582 stars16 May 2026: 6,594 stars23 May 2026: 6,608 stars30 May 2026: 6,611 stars6 Jun 2026: 6,615 stars13 Jun 2026: 6,621 stars20 Jun 2026: 6,629 stars27 Jun 2026: 6,634 stars4 Jul 2026: 6,643 stars11 Jul 2026: 6,651 stars18 Jul 2026: 6,665 stars25 Jul 2026: 6,674 stars1 Aug 2026: 6,681 stars8 Aug 2026: 6,863 stars15 Aug 2026: 7,485 stars22 Aug 2026: 7,538 stars29 Aug 2026: 7,564 stars5 Sept 2026: 7,600 stars12 Sept 2026: 7,629 stars19 Sept 2026: 7,654 stars26 Sept 2026: 7,667 stars3 Oct 2026: 7,678 stars10 Oct 2026: 7,692 stars17 Oct 2026: 7,707 stars24 Oct 2026: 7,716 stars31 Oct 2026: 7,726 stars
    7.7k ★
    49
  5. 5
    alphafoldProtein structure prediction inference pipeline from AlphaFold v2, including Multimer43rd in Open models · Apache-2.0
    4 Apr 2026: 14,320 stars11 Apr 2026: 14,370 stars18 Apr 2026: 14,384 stars25 Apr 2026: 14,427 stars2 May 2026: 14,451 stars9 May 2026: 14,479 stars16 May 2026: 14,498 stars23 May 2026: 14,522 stars30 May 2026: 14,546 stars6 Jun 2026: 14,569 stars13 Jun 2026: 14,593 stars20 Jun 2026: 14,611 stars27 Jun 2026: 14,625 stars4 Jul 2026: 14,643 stars11 Jul 2026: 14,659 stars18 Jul 2026: 14,673 stars25 Jul 2026: 14,698 stars1 Aug 2026: 14,713 stars8 Aug 2026: 14,729 stars15 Aug 2026: 14,743 stars22 Aug 2026: 14,762 stars29 Aug 2026: 14,780 stars5 Sept 2026: 14,791 stars12 Sept 2026: 14,819 stars19 Sept 2026: 14,833 stars26 Sept 2026: 14,842 stars3 Oct 2026: 14,853 stars10 Oct 2026: 14,865 stars17 Oct 2026: 14,893 stars24 Oct 2026: 14,908 stars31 Oct 2026: 14,920 stars
    14.9k ★
    31
  6. 6
    deepchemPython library for deep learning on molecules, materials and biological data110th in ML libraries · MIT
    4 Apr 2026: 6,605 stars11 Apr 2026: 6,614 stars18 Apr 2026: 6,629 stars25 Apr 2026: 6,648 stars2 May 2026: 6,659 stars9 May 2026: 6,682 stars16 May 2026: 6,702 stars23 May 2026: 6,714 stars30 May 2026: 6,736 stars6 Jun 2026: 6,753 stars13 Jun 2026: 6,761 stars20 Jun 2026: 6,774 stars27 Jun 2026: 6,785 stars4 Jul 2026: 6,794 stars11 Jul 2026: 6,825 stars18 Jul 2026: 6,859 stars25 Jul 2026: 6,873 stars1 Aug 2026: 6,885 stars8 Aug 2026: 6,905 stars15 Aug 2026: 6,921 stars22 Aug 2026: 6,936 stars29 Aug 2026: 6,954 stars5 Sept 2026: 6,963 stars12 Sept 2026: 6,977 stars19 Sept 2026: 6,996 stars26 Sept 2026: 7,012 stars3 Oct 2026: 7,028 stars10 Oct 2026: 7,048 stars17 Oct 2026: 7,066 stars24 Oct 2026: 7,089 stars31 Oct 2026: 7,115 stars
    7.1k ★
    31
  7. 7
    pinnsReference code for physics-informed neural networks solving and discovering PDEs124th in ML libraries · MIT
    4 Apr 2026: 5,693 stars11 Apr 2026: 5,708 stars18 Apr 2026: 5,733 stars25 Apr 2026: 5,757 stars2 May 2026: 5,775 stars9 May 2026: 5,800 stars16 May 2026: 5,815 stars23 May 2026: 5,836 stars30 May 2026: 5,861 stars6 Jun 2026: 5,888 stars13 Jun 2026: 5,909 stars20 Jun 2026: 5,935 stars27 Jun 2026: 5,956 stars4 Jul 2026: 5,977 stars11 Jul 2026: 5,989 stars18 Jul 2026: 6,015 stars25 Jul 2026: 6,030 stars1 Aug 2026: 6,051 stars8 Aug 2026: 6,069 stars15 Aug 2026: 6,079 stars22 Aug 2026: 6,095 stars29 Aug 2026: 6,109 stars5 Sept 2026: 6,120 stars12 Sept 2026: 6,137 stars19 Sept 2026: 6,153 stars26 Sept 2026: 6,170 stars3 Oct 2026: 6,179 stars10 Oct 2026: 6,193 stars17 Oct 2026: 6,209 stars24 Oct 2026: 6,223 stars31 Oct 2026: 6,234 stars
    6.2k ★
    13

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